Please cite - ConTra is described in
Broos S, Hulpiau P, Galle J, Hooghe B, Van Roy F, De Bleser P
ConTra v2: a tool to identify transcription factor binding sites across species, update 2011.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W74-8. Epub 2011 May 16.
1Casas E, Kim J, Bendesky A, Ohno-Machado L, Wolfe CJ, Yang J
 Snail2 is an Essential Mediator of Twist1-Induced Epithelial Mesenchymal Transition and Metastasis
 Cancer Res. 2011 Jan 1;71(1):245-254
2Brandl M, Seidler B, Haller F, Adamski J, Schmid RM, Saur D, Schneider G
 IKK(alpha) controls canonical TGF(beta)-SMAD signaling to regulate genes expressing SNAIL and SLUG during EMT in panc1 cells.
 J Cell Sci. 2010 Dec 15;123(Pt 24):4231-9. Epub 2010 Nov 16
3Logotheti S, Michalopoulos I, Sideridou M, Daskalos A, Kossida S, Spandidos DA, Field JK, Vojtesek B, Liloglou T, Gorgoulis V, Zoumpourlis V
 Sp1 binds to the external promoter of the p73 gene and induces the expression of TAp73gamma in lung cancer.
 FEBS J. 2010 Jul;277(14):3014-27. Epub 2010 Jun 7
4Bonnet E, Tatari M, Joshi A, Michoel T, Marchal K, Berx G, Van de Peer Y
 Module network inference from a cancer gene expression data set identifies microRNA regulated modules
 PLoS One. 2010 Apr 14;5(4):e10162
5Wu JM, Xu Y, Skill NJ, Sheng H, Zhao Z, Yu M, Saxena R, Maluccio MA
 Autotaxin expression and its connection with the TNF-alpha-NF-kappaB axis in human hepatocellular carcinoma
 Mol Cancer. 2010 Mar 31;9:71
6Van Poucke M, Melkebeek V, Erkens T, Van Zeveren A, Cox E, Peelman LJ
 Molecular cloning and characterization of the porcine prostaglandin transporter (SLCO2A1): evaluation of its role in F4 mediated neonatal diarrhoea
 BMC Genet. 2009 Oct 6;10:64
7van Hijum SA, Medema MH, Kuipers OP
 Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
 Microbiol Mol Biol Rev. 2009 Sep;73(3):481-509
8Lai RH, Wang MJ, Yang SH, Chen JY
 Genomic organization and functional characterization of the promoter for the human suppressor of cytokine signaling 6 gene
 Gene. 2009 Dec 1;448(1):64-73. Epub 2009 Aug 28
9Huys L, Van Hauwermeiren F, Dejager L, Dejonckheere E, Lienenklaus S, Weiss S, Leclercq G, Libert C
 Type I interferon drives tumor necrosis factor-induced lethal shock
 J Exp Med. 2009 Aug 31;206(9):1873-82. Epub 2009 Aug 17
10Sebestyén E, Nagy T, Suhai S, Barta E
 DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.
 BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S6
11Vandepoele K, Andries V, van Roy F
 The NBPF1 promoter has been recruited from the unrelated EVI5 gene before simian radiation
 Mol Biol Evol. 2009 Jun;26(6):1321-32. Epub 2009 Mar 12
12Hestand MS, van Galen M, Villerius MP, van Ommen GJ, den Dunnen JT, 't Hoen PA
 CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.
 BMC Bioinformatics. 2008 Nov 26;9:495
13Conceicao N, Cox CJ, Simoes B, Viegas M, Cancela ML
 Comparative promoter analysis and its application to the identification of candidate regulatory factors of cartilage-expressed genes
 J. Appl. Ichthyol. 26 (2010), 245-250
14Enquobahrie DA, Qiu C, Muhie SY, Williams MA
 Maternal peripheral blood gene expression in early pregnancy and preeclampsia
 Int J Mol Epidemiol Genet 2011;2(1):78-94
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