PWMs for TFBS:
AP1_C
AP1_01
AP1_Q2_01
OCT1_05
SP1_01
SP1_Q4_01
MA0079
Your input:
Genes_Alignments: IL2___NM_000586___UCSC_multiz_17way_5000_upstream
Stringency: 90_75

Your results:
 
Available for download (use Jalview to generate output for publishing purposes) help

IL2___NM_000586___UCSC_multiz_17way_5000_upstream.fc
IL2___NM_000586___UCSC_multiz_17way_5000_upstream.fasta

Preview alignment (use the checkboxes to switch the TFs)
predicted TFBS found on IL2___NM_000586___UCSC_multiz_17way_5000_upstream

HOMO SAPIENS   acata-c-------------------------------aaagtctatt------------
PANTRO1   acata-c-------------------------------aaagtctatt------------
RHEMAC2   acata-c-------------------------------aaagtctatt------------
RN4   actca-tgcataaatgcacacatgtgcatgcaaactcaaaaatatttttaaaaaatgaaa
MM8   --------------------------------------aaaatattttttaaaaatgaaa
ORYCUN1   ac------------------------------------aaagtctatt------------
BOSTAU2   acata-t-------------------------------aaagtctact------------
CANFAM2   acata-a-------------------------------aaagtctatt------------
DASNOV1   ac----a-------------------------------taggtctgtt------------
LOXAFR1   ............................................................
ECHTEL1   acatatt-------------------------------atagtctatg------------
MONDOM4   ............................................................
pos -500 to -485
HOMO SAPIENS   ----------------ataaaactagcatcagtatccttgaatgcaaacctttttctgag
PANTRO1   ----------------ataaaactagcatcagtatccttgaatgcaaacctttttctgag
RHEMAC2   ----------------ataaaactagcatcagtatccttgaatgcaaacctttttctgag
RN4   gtgcaacttgaaacatacaaaaatagcaccaacatccttagatgcaa--tccttcctgag
MM8   gtgcaactagagacatataaaa-taacaccaacatccttagatgcaa--cccttcctgag
ORYCUN1   ----------------ataaaactagaatcaatatcctcaggtgcaa----ctttctgag
BOSTAU2   ----------------ataaaactagcatcgatacccttgaatgtaaactcatttctgag
CANFAM2   ----------------ataaaactagcatcggcacccttgggtgcaaagcattttctgag
DASNOV1   ----------------tttgaactagcatcaatatctttgcatacaaactgtttcctgat
LOXAFR1   ............................................................
ECHTEL1   ----------------accaaacgagcatcagtactcttggaagcaagctcatatttatt
MONDOM4   ............................................................
pos -484 to -441
HOMO SAPIENS   tattta---acaatcgca--ccctttaaaa----aatgtacaatagacattaagagactt
PANTRO1   tattta---acaatcgca--ccctttaaaa----aatgtacaatagacattaagagactt
RHEMAC2   tattta---acaattgca--ccctttaaaa----aacgtacaatagacattaaaacactt
RN4   aatttgttggagatcata--ctctttttaa----aaagcacaataaacatcaagacactt
MM8   aatttgttggacatcata--ctctttttaa----aaagcataataaacatcaagacactt
ORYCUN1   tatttgttcaacatcatt--ctcttttaaacaaaaaagtacaacagacactaagagatgt
BOSTAU2   tattt----aacaccaca--ctattaaaaa----aaagtacaacagacattaagagatgt
CANFAM2   tattt-------atcatatccatttttaaa----aatgtataatagatactaagagatta
DASNOV1   tattta---aacaccata--cccttttgaa----aa---------aacataaagagcttt
LOXAFR1   ............................................................
ECHTEL1   tgtta----aatatcata--tcctttaaaaaaaaaaggtactacaaacatgaagcgattt
MONDOM4   ............................................................
pos -440 to -390
HOMO SAPIENS   aaacagatatata--atcattt----taaa------ttaaaatagcgttaa-------ac
PANTRO1   aaacagacatata--aacattt----taaa------ttaaaatagcgttaa-------ac
RHEMAC2   aaacagatatata--aacattt----taaa-----attaaaacagcgtaaa-------at
RN4   aaattgtcaca-a--aacatgt----taaattaaatttaaaacaac---aa-------at
MM8   a------caca-a--aatatgt----taaattaaatttaaaacaac---aacgacaaaat
ORYCUN1   aaacagatacaga--aatgtgt----taaa----atttaa------------------ac
BOSTAU2   aaacagacaca-a--gaaacat----taaa-----ac------agcataaa-------ac
CANFAM2   aaacagataca-a--gaaacat----taaa-----actaaaatagcacaaa-------ac
DASNOV1   aaacagataca-agcaacatgt----taaa-------aataacagcttaaa-------at
LOXAFR1   ..........................taaa------ttaaaacagcataga-------ag
ECHTEL1   aaatagacaca-a--gaaaagtgttt-----------agaagttggataaa-------gc
MONDOM4   ..........................--------------------gctta-------ac
pos -389 to -349
HOMO SAPIENS   agtacctcaagctcaa--t-aagcattttaagtattctaatcttag-tatttct---cta
PANTRO1   agtacctcaagctcaa--t-aagcattttaagtattctaatcttag-tatttct---cta
RHEMAC2   agtacctcaagctcaa--t-aagcattttatgtattctaatcttag-tatttct---cta
RN4   attacctcaagctcaa--c-cagcattttaggggtccttatcttac-tatttct---ctg
MM8   agtacctcaagctcaa--c-aagcattttaggtgtccttagcttac-tatttct---ctg
ORYCUN1   agtacctcaagctcaa--c--agtgttttatgtattctaatcctaa-tatttct---ctg
BOSTAU2   agtgccccaaactca-------gtattttatgtattctaattttaa-tacctct---cta
CANFAM2   tgtacctcaagctcaa--t-gagtattttatgtattctaatctcaa-t--ttct---cta
DASNOV1   -gtacctcaagctcaa--t-gagcattttatatattctaatcttaa-tattcct---cta
LOXAFR1   agtacctcaagttcaa--t-gagcattttatatattttaattttag-tatttctcttcta
ECHTEL1   aacacctcaaactgaa--ttaaaaattatatatattctaatcttaa-tatttatgttcta
MONDOM4   agaatcacatttacaggct-gcttatctgatggatggaaatctcaaatagttat----ta
pos -348 to -296
HOMO SAPIENS   gctgac-at----gtaaga---------agcaatct--------atcttattgtatgcaa
PANTRO1   gctgac-at----gtaaga---------agcaatct--------atcttattgtatgcaa
RHEMAC2   gctgac-at----gtaaga---------agcaatct--------atcttattgtatacaa
RN4   gctagc--tagctgtatga---------agccatct--------atcaccttgtgtgcaa
MM8   gctaac--t----gtatga---------agccatct--------atcaccctgtgtgcaa
ORYCUN1   actg----t----gtaaga---------attcatct--------atcatattgcatgcaa
BOSTAU2   gctgattgt----gtaaga---------agtaatct--------atcacattgtatgca-
CANFAM2   gctgattgt----gtaagt---------agtaatct--------atca---tgtatgca-
DASNOV1   gctaattgt----gtgaga---------cgtaatct--------atcacattgtatgca-
LOXAFR1   gctgattgt----gtaaga---------agtaatct--------atcacaccgtatgca-
ECHTEL1   gctgattgt----gtgaaa---------agtaatct--------atcacattgtaggca-
MONDOM4   cccagctgt----gtaaaagaaaaaaaaagtaatttctgctcacatcactttgtaggca-
pos -295 to -258
HOMO SAPIENS   ttagc----tcattgtgtggataaaaaggtaaaaccattctgaaacaggaaaccaataca
PANTRO1   ttagc----tcattgtgtggataaaaaggtaaaaccattctgaaacaggaaaccaataca
RHEMAC2   ttagc----tcattgtgtggataaaaaggtaaaaccattctgaaacaggaaaccaagata
RN4   ttagc----tcgtcgtgtagataagaaggtgaaaccatcttgaaacaggaaaccaatatt
MM8   ttagc----tcattgtgtagataagaaggtaaaaccatcttgaaacaggaaaccaatatc
ORYCUN1   ttagc----tcataatgtagatcaaaagttaaagccatcctgaaacaggaaaccaatatt
BOSTAU2   ttagctcagtcatcgtggagat-aaaaggtaaagccatcctggaacaggaaaccaatatt
CANFAM2   ttagcgcagtcattgtgcagatcaaaaggtaaaaccatccta-aacaggaaaccaatatt
DASNOV1   ttagctcagttattatgcagataaaaaagtaaaaccatcctgaaacaggaaaccaatatt
LOXAFR1   atacctaagtcattatgtagataaaa-ggtaaaaccatcctgaaacaggaaaccaatatt
ECHTEL1   ttagctaa---attgtgtagataaaaaggtaaaagcatcctgaaacaggaaaccaatatt
MONDOM4   ttagctcaggctctgcaggagaagaaaggcaaaaccaccttgaaacaggaaacccatatt
pos -257 to -202
HOMO SAPIENS   cttcctgttttatcaacaaatctaaac-atttattcttttcatctgttta----------
PANTRO1   cttcctgtttaatcaacaaatctaaac-atttattcttttcatctgttta----------
RHEMAC2   cttcctgtttaatcaacaaatctaaac-atttattcttttcatctattta----------
RN4   cttcctgtctaatcaacaaatctaaaagatttattcttttcatctatctc----------
MM8   cttcctgtctaatcaacaaatctaaaagatttattcttttcatctatctc----------
ORYCUN1   cttcctgtttaatcaacaaatctaaaa-atttattcttttcatctattta----------
BOSTAU2   cttcctgtttaatcaacaaatctaaaa-atttattcttttcaactattta----------
CANFAM2   cttcctgtttaatcaacaaatctaaaa-atttattcttttcaactattta----------
DASNOV1   cttcctgtttaatcaacaaatctaaaa-atttattcttttcatctattta----------
LOXAFR1   cttcctgtttaatcaacaaatctaaaa-atttattcttttcatctattta----------
ECHTEL1   cttcctgtttaatcaacaaatctaaac-ttttattcttttcatctattga----------
MONDOM4   cttcctgtttaatcaacaaatttcaaa-ttttattttatttatctgtttatatttctccc
pos -201 to -153
HOMO SAPIENS   -----ctcttgctcttgtccaccacaatatgctattc-acatgttcagtgtagttttatg
PANTRO1   -----ctcttgctcttgtccaccacaatatgctactc-acatgttcagtgtagttttatg
RHEMAC2   -----ttcttgctcttgtccaccacaatatgctactc-acatgttcagtgcagttttatg
RN4   -----cttttgcgtttgtccaccacaacaagctgctt-acaggttcaggatggtttt--g
MM8   -----ctcttgcgtttgtccaccacaacaggctgctt-acaggttcaggatggtttt--g
ORYCUN1   -----ttcttactcttgtccaccacaacatgcagctt-acatgt-catcatagttttatg
BOSTAU2   -----ctcttgttcttgtccaccacaacatggtgctccacatgttccgcacagttttatg
CANFAM2   -----ctcttgt------ccaccacaccatagtgctccacatgttcatcattgttttatg
DASNOV1   -----ctcttgttcttgtccac---aacatgctgctccacatgttcagcatggttttatg
LOXAFR1   -----ctcttgctcttgtccaccgcagcatgctgctccacatattcggcatggttttatg
ECHTEL1   -----ctcttgctcttgtccaccgcagctcactgctc-acagatgccgcatggttttacg
MONDOM4   cccaccccccgcacatgtccggtacaacgtgctgttc---------tagatggttttgtg
pos -152 to -99
HOMO SAPIENS   acaa----------aga--aaattttc-tgagttacttttgtatccccacccccttaaag
PANTRO1   acaa----------agagaaaattttcgtgagttacttttgtatccccacccccttaaag
RHEMAC2   acaa----------agagaaaattttcatgagttacttttgtatccccacccccttaaag
RN4   acaagttttgacaaagagagcattttcatgagttacttttgtatctccacccc-------
MM8   acaa----------agagaacattttcatgagttacttttgtgtctccacccc-------
ORYCUN1   acaa----------agagaaaattttcatgagttacttttgtatctccacccccttaaag
BOSTAU2   acaa----------agagaaatttttcatgagccatttttgtatccccacccccttaaag
CANFAM2   acaa----------agagaaaattttcatgagccacttttgtatccccacccccttaaag
DASNOV1   acaa----------aga--acatttttatgagccaattttgtatccccacccccttagtg
LOXAFR1   acaa----------agagaaaattttcatgagccacttttgtatccccaccctcttagtg
ECHTEL1   aca------------gagaaaattttcatgagccgctttggtatcccctctctctgaatg
MONDOM4   acaa----------agagaaaattttcatgagcaacctctgta-----acccctttagcg
pos -98 to -52
HOMO SAPIENS   a---aaggaggaaaaactgtttcatacagaaggcgttaattgcatgaattag--ag
PANTRO1   a---aaggaggaaaaactgtttcatacagaaggcgttaattgcatgaattag--ag
RHEMAC2   a---aaggaggaaaaactgtttcatacagaaggcgttaattgcatgaattag--ag
RN4   ----aaaaaggaaaatttgtttcatacagaaggcgttcattatatgaattaa--aa
MM8   ----aaagaggaaaatttgtttcatacagaaggcgttcattgtatgaattaa--aa
ORYCUN1   a---aaggaggaaaaattgtttcatacagaaggcgttagttgtatgaattag--aa
BOSTAU2   aaagagggaggaaaaactgtttcatacagaaggcgttagttgtatgaattag--aa
CANFAM2   aaagagggaggaaaaattgtttcatacagaaggcgttagttgtatgaattac--aa
DASNOV1   aaagagggaggaaaaactgtttcatacagaaggcgttagttatatgaattgg--aa
LOXAFR1   aaa-gaggaggaaaatctgtttcatacagaaggcgttagttatatgaattag--aa
ECHTEL1   aaa-gaggaggaaaatttgtttcatacagaaggcgttagttttatgaattag--aa
MONDOM4   aga-ggggaggaaaaattggttcatgcaaa--gcttcaa-------aagtagccaa
pos -51 to -1