PWMs for TFBS:
EBOX_Q6_01
TATA_C
TATA_01
Your input:
Genes_Alignments: ATOH7___NM_145178___UCSC_multiz_17way_5000_upstrea...
Stringency: 90_75

Your results:		 
Available for download (use Jalview to generate output for publishing purposes) help

ATOH7___NM_145178___UCSC_multiz_17way_5000_upstrea....fc
ATOH7___NM_145178___UCSC_multiz_17way_5000_upstrea....fasta

Preview alignment (use the checkboxes to switch the TFs)
predicted TFBS found on ATOH7___NM_145178___UCSC_multiz_17way_5000_upstrea...

HOMO SAPIENS   tttgga-gaaacttc-aacagactaatgctgtaatgtcaggattttgctgt-gcgtcgcc
PANTRO1   tttgga-gaaacttc-aacagactaatgctgtaatgtcaggattttgctgt-gcgtcgcc
RHEMAC2   tttgga-gaaacttc-aacagactaaggctgtaatgtcaggattttgctgt-gagtcgcc
RN4   tttaga-gaaacttc-aaaagacgaaggcagtgatgtcagaattttgctgt-gcgtcgcc
MM8   tttgga-gacacttc-aacagacgaaggcaatgatgtcaggattttgctgt-gcgtcgcc
ORYCUN1   tctgga-gaaacttc-aacagacgaaggctgtaccgtcaggatgcggctgt-gcttcgcc
BOSTAU2   tttgga-gaaacttccaacagacgaagccggtgatgtcaggattttgctgt-gcgtcgtc
CANFAM2   tttgga-ggaacttc-aacagacgaaggctgtagtgtcaggattttgctgt-gcgtcgtc
LOXAFR1   tttaga-gacacttc-aacagacgaagggtgtaacgtcaggactttgctgt-gcgtcgcc
ECHTEL1   ggtgga-gaaacctc-aacagacgaaggctgtaatgtcaggattttggtgc-gcgtcgcc
MONDOM4   tttgga-gagacttc-aacagacgaaggcagaattgtcaggattttgctag-gattcccc
GALGAL2   tttggaagacttctc-aacagatgaaggctgtaatgttcgggttttactgttgcttcttt
XENTRO1   agagca-catccctctgccagactgatgctgcaaacttagagatttgctgc-a-------
FR1   ............................................................
pos -200 to -144
HOMO SAPIENS   c-cc--tc-------------ctccccgcagttcccagggtaggaaggtgctgagataga
PANTRO1   c-cc--tc-------------ctccccgcagttcccagggtaggaaggtgctgagataga
RHEMAC2   c-cc--tc-------------ccccccgcagttcccagggtaggaaggtgctgagataga
RN4   ctcc--tc-------------ccccctgctgttcccagggtaggaaggtgctgagatggg
MM8   c-cc--tc-------------ccccctgccgttcccagggtaggaaggtgctgagatggg
ORYCUN1   c-cc--gc-------------ccccc-gccgttcccagggcaggaaggtgctgagttgga
BOSTAU2   c-cccttc-------------ccccctgcggttcccagggtaggaaggtgctgagatgga
CANFAM2   c-cccttc-------------ccccctgcagttcccagggtaggaaggtgctgagatgga
LOXAFR1   c-cc--ct-------------ccccc-gcagttcccagggtaggaaggtgctgagatgga
ECHTEL1   c-cc--tc-------------ccccc-acagttcccagggtaggaaggtgctgagatgga
MONDOM4   c-cc--cc-------------ccccctgcagttcccagggtaggaaggtgctgagacaga
GALGAL2   t-tt--tttttttttttttgtccccctgtggttcccaggctgggaaggtactgggatgga
XENTRO1   --tt--ct-------------catcctatatttcccagggtgggaataagctggggcaga
FR1   ............................................................
pos -143 to -100
HOMO SAPIENS   agccgagggacgcccgcccacctgccaccacctgttccctcc-------ttcagctcttt
PANTRO1   agccgagggacgcccgcccacctgccaccacctgttccctcc-------ttcagctcttt
RHEMAC2   agccgagggacgcccgcccacctgccaccacctgttccctcc-------ttcagctctct
RN4   agcagagggacgcccgcccacctggcaccacctgttccctcc-------ttgagccctgg
MM8   agcggagggacgcccgcccacctgccaccacctgttccctcc-------ttgagccctgg
ORYCUN1   agccgagggacgcccgcccacctgccaccacctgttcgctcc-------tttggcc-tcc
BOSTAU2   agccgagggacgcccgcccacctgccaccacctgttccctcc-------ttcagccttct
CANFAM2   agccgagggacgcccgcccacctgccaccacctgttccctcc-------ctccgccctcg
LOXAFR1   agccgagggacgccctcccacctgccaccacctgttccttcg-------ttcagccctcg
ECHTEL1   agcctggggacgcctgcccacctgccaccacctgttccctcc-------ttcagccctcc
MONDOM4   ggcagggggacgccagcccacctgctaccacctgttcaatcc-------tccagtcctct
GALGAL2   agcagagtgccgcccgcccacctgctaccacctgtttagcc---------ttagcaattt
XENTRO1   agctaagggacgcctgcccacctgccaccatctgctaagcct-------ttccattctct
FR1   ..........cacctgggctcctcccacca-ctgttcctcccacctgggctcctcccacc
pos -99 to -47
HOMO SAPIENS   -------gctataaattctcctc---cctc-----------------------------c
PANTRO1   -------gctataaattctcctc---cctc-----------------------------c
RHEMAC2   -------gctataaattctcctc---cctc-----------------------------c
RN4   -------gctataaattctcctc---cctc-----------------------------a
MM8   -------gctataaattctcctc---cctc-----------------------------a
ORYCUN1   -------gctataaattctcctc---cctc-----------------------------c
BOSTAU2   -------gctataaattctcctc---cttc-----------------------------a
CANFAM2   -------gctataaatcctcctc---cttc-----------------------------a
LOXAFR1   -------gctataaagcctcctc---c-tc-----------------------------a
ECHTEL1   -------gctatatatgctgctc---c---------------------------------
MONDOM4   -------gctataaattctcctc---ctcctctttctcgaagagagtggtgtttgctacc
GALGAL2   --------ctataaagcctcttcgagtctg-----------------------------t
XENTRO1   atatatagatataaatgc..........................................
FR1   -------actgt------tcctc---ccac-----------------------------c
pos -46 to -26
HOMO SAPIENS   aagattcattctgca-ctctc-c---gaca
PANTRO1   aagattcattctgca-ctctc-c---gaca
RHEMAC2   aagactcatcccgca-ctctc-c---gaca
RN4   ctgctctgtccagcg-ctctt-c---caca
MM8   tcgctctgtccg---------------aca
ORYCUN1   aagagccacccggca-ctttc-c---gacg
BOSTAU2   aagattgatccagca-ctctc-c---caca
CANFAM2   aagctgcatccagcaactctc-c---aaca
LOXAFR1   aaggttcacccagca-ctctc-ctccgaca
ECHTEL1   aagattccccctgca-ctct------gatc
MONDOM4   aagaagctctct..................
GALGAL2   aagacacaatcattg-cttac-c---gacg
XENTRO1   ..............................
FR1   agggctc---------ctcccac---cact
pos -25 to -1